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Clonal Plants as Meta-Holobionts

Nathan Vannier , Cendrine Mony , Anne‐kristel Bittebière , Kevin Theis , Eugene Rosenberg , et al.
mSystems, 2019, 4 (2), pp.e00213-18. ⟨10.1128/mSystems.00213-18⟩
Journal articles hal-02092384v1

Community analysis of a microbial mat involved in the oxydation of iron by metatranscriptomics

Achim Quaiser , Andre-Jean Francez , Alexis Dufresne , Philippe Vandenkoornhuyse
Colloque Génomique Environnementale, Nov 2011, Lyon, France
Conference papers hal-01157226v1

Diversity of microbes : toward new frontiers.

Philippe Vandenkoornhuyse
Conférence Jacques Monod, Jun 2007, Roscoff, France
Conference papers hal-00429867v1

Prediction of fungal functions in deep hydrothermal ecosystems from a metagenomic approach.

Philippe Vandenkoornhuyse
2nd EMAE Meeting, Apr 2008, Reikjavik, Iceland
Conference papers hal-00464912v1
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Multi-genome metabolic modeling predicts functional inter-dependencies in the Arabidopsis root microbiome

Victor Mataigne , Nathan Vannier , Philippe Vandenkoornhuyse , Stéphane Hacquard
Microbiome, 2022, 10 (1), pp.217. ⟨10.1186/s40168-022-01383-z⟩
Journal articles hal-03923098v1
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The drivers of vine-plant root microbiota endosphere composition include both abiotic and plant-specific factors

Marine Biget , Cendrine Mony , Marc Aubry , Olivier Jambon , Achim Quaiser , et al.
OENO One, 2021, 55 (3), pp.299-315. ⟨10.20870/oeno-one.2021.55.3.4616⟩
Journal articles hal-03413043v1

La structure de la communauté fongique associée à un individu plante est-elle déterminée par ses voisins et à quelle échelle spatio-temporelle ?

Anne‐kristel Bittebière , Cendrine Mony , Elodie Maluenda , Agnès Gareil , Alexandra Dheilly , et al.
10ème Congrès francophone d’Ecologie des communautés végétales ECOVEG 10, Apr 2014, Lyon, France
Conference poster hal-01090585v1

Diversité de plantes et diversité des champignons dans le microbiome racinaire : une relation étroite

Philippe Vandenkoornhuyse
Journée scientifique autour du sequencage en metagénomique, Roche Diagnostic, Mar 2014, Paris, France
Conference papers hal-01162951v1

A journey to the unknown world

Philippe Vandenkoornhuyse
2012
Other publications hal-01163349v1
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Sustainable agriculture: possible trajectories from mutualistic symbiosis and plant neodomestication

Marie Duhamel , Philippe Vandenkoornhuyse
Trends in Plant Science, 2013, 18 (11), pp.597-600. ⟨10.1016/j.tplants.2013.08.010⟩
Journal articles hal-00932183v1

Toward the next green revolution

Philippe Vandenkoornhuyse
University of Halle Kolloquium Bodenökologie, Sep 2016, Halle, Germany
Conference papers hal-02427524v1

Sous les projecteurs du concept d’holobionte et de méta-holobionte, une nouvelle révolution copernicienne ?

Philippe Vandenkoornhuyse
IXe Colloque de l’Association Francophone d’Ecologie Microbienne, Nov 2019, Bussang, France
Conference papers hal-02421950v1

Organic agriculture and field edges uphold endospheric wheat microbiota at field and landscape scale

Claire Ricono , Philippe Vandenkoornhuyse , Stéphanie Aviron , Olivier Jambon , Sophie Michon-Coudouel , et al.
FEMS Microbiology Ecology, 2022, 98 (3), pp.fiac027. ⟨10.1093/femsec/fiac027⟩
Journal articles hal-03631261v1

Microbiota analysis: Toward post-metagenomics and post-metatranscriptomics

Philippe Vandenkoornhuyse
Workshop « Single Cell Analyses », Scenion, Sep 2019, Lyon, France
Conference papers hal-02422729v1

Plants as holobionts: New understandings, new opportunities

Philippe Vandenkoornhuyse
8th Congress of European Microbiologists (FEMS), Jul 2019, Glasgow, United Kingdom
Conference papers hal-02422810v1

Secret 86 : De la vie à plusieurs kilomètres dans les sédiments marins

Karine Alain , Philippe Vandenkoornhuyse
FAURE denis; JOLY Dominique; SALAMITOU Sylvie. 101 secrets de l’ADN, Paléogénomique et histoires évolutives, CNRS, 2019, 2271123232
Book sections hal-02359993v1

Fungi in deep sea and metagenomics

Stéphane Mahé , Vanessa Rédou , Thomas Le Calvez , Philippe Vandenkoornhuyse , Gaëtan Burgaud
Francis Martin. Ecological Genomics of the Fungi, John Wiley & Sons, pp.325-354, 2014, 9781119946106
Book sections hal-01118978v1
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AM fungi patchiness and the clonal growth of Glechoma hederacea in heterogeneous environments

Nathan Vannier , Anne‐kristel Bittebière , Philippe Vandenkoornhuyse , Cendrine Mony
Scientific Reports, 2016, 6 (1), pp.37852. ⟨10.1038/srep37852⟩
Journal articles hal-01432093v1

Community analysis of a microbial mat involved in the oxidation of iron by metatranscriptomics

Xavier Bodi , Alexis Dufresne , Andre-Jean Francez , Philippe Vandenkoornhuyse , Achim Quaiser
Jacques Monod Conference “Integrative Ecological Genomics”, Oct 2011, Roscoff, France
Conference poster hal-01159120v1

Using hybrid automata modelling to study phenotypic plasticity and allocation strategies in the plant mycorrhizal mutualism

Shahrad Jamshidi , Jocelyn E. Behm , Damien Eveillard , E. Toby Kiers , Philippe Vandenkoornhuyse
Ecological Modelling, 2015, 311, pp.11-19. ⟨10.1016/j.ecolmodel.2015.04.021⟩
Journal articles hal-01157450v1

Mutualisme, évolution, agriculture : un jeu dangereux ?

Philippe Vandenkoornhuyse
2012
Other publications hal-01163346v1

Carbon-glucose use by soil bacterial communities in interaction with earthworm activities: toward a C-13-SIP-RNA strategy.

Cécile Monard , Philippe Vandenkoornhuyse , Françoise Binet
International Symposium on Microbial Ecology (ISME), Aug 2006, Vienne, Austria
Conference papers hal-00562092v1

What rules plant community assembly and structure ? The importance of the plant-microorganisms partnership.

Philippe Vandenkoornhuyse
Annual Norforsk Meeting, Oct 2009, Helsinki, Finland
Conference papers hal-00464917v1

Rare Bacterial Assembly in Soils Is Mainly Driven by Deterministic Processes

Qicheng Xu , Ning Ling , Achim Quaiser , Junjie Guo , Jianyun Ruan , et al.
Microbial ecology, 2022, 83 (1), pp.137-150. ⟨10.1007/s00248-021-01741-8⟩
Journal articles hal-03192057v1

Identification of atrazine-degraders under soil bioturbation by ursing RNA-SIP strategy.

Cécile Monard , Philippe Vandenkoornhuyse , Françoise Binet
1st International Congress ‘Interactions between physico-chemical and microbiological processes in the environment'., Oct 2008, Clermont Ferrand, France
Conference papers hal-00562067v1

C-13-RNA stable isotope probing, as new strategy to assess earthworm impact on bacterial degradation of diverse organic compounds in soil.

Cécile Monard , Oscar Lima , Philippe Vandenkoornhuyse , Françoise Binet
Conférences Internationales Jacques Monod ‘Environmental genomics: from individual genomes to genomes of complex communities', Jun 2007, Roscoff, France
Conference papers hal-00562086v1

Relationship between bacterial diversity and function under biotic control: the soil pesticide degraders as a case study

Cécile Monard , Philippe Vandenkoornhuyse , Barbara Le Bot , Françoise Binet
The International Society of Microbiologial Ecology Journal, 2011, 5 (6), pp.1048-1056. ⟨10.1038/ismej.2010.194⟩
Journal articles hal-00651076v1

Functional community analysis of a microbial mat involved in the oxydation of iron by metatranscriptomics

Achim Quaiser , Philippe Vandenkoornhuyse , Andre-Jean Francez , Alexis Dufresne
Annual Conference of the Association for General and Applied Microbiology, Mar 2012, Tübingen, France
Conference papers hal-01157157v1

Is the diversity of the active plant root microbiome spatially structured?

Amandine Lê Van , Achim Quaiser , Philippe Vandenkoornhuyse , Alexandra Dheilly , Sophie Coudouel , et al.
Colloque Génomique Environnementale ‘Diversité, évolution et fonctionnement du vivant à l’ère des nouvelles technologies de séquençage’, Aug 2013, Rennes, France
Conference poster hal-01159027v1

Champignons : une nouvelle diversité et prédictions fonctionnelles métagénomique

Philippe Vandenkoornhuyse
Journées Jean Chevaugon – 8èmes rencontres de phytopathologie-mycologie, Jan 2010, Aussois, France
Conference papers hal-01163368v1